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Engineering  |  Center for Biosignatures Discovery Automation

Publications

Below are links to the publications from faculty in the Center for Biosignatures Discovery Automation

Deirdre Meldrum

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2015

2015

  1. Xu Shi, Weimin Gao, J Wang, Shih-Hui Chao, Weiwen Zhang, Deirdre R. Meldrum.  Measuring Gene expression in single bacterial cells: recent advances in methods and micro-devices. Crit Rev Biotechnol. 2015 Dec;35(4):448-60. doi: 10.3109/07388551.2014.899556. Epub 2014 Apr 7.
  2. Bo Wang, J Yu, Weiwen Zhang, Deirdre R. Meldrum. Premethylation of foreign DNA improves integrative transformation efficiency in Synechocystis sp. strain PCC 6803.Appl Environ Microbiol. 2015 Dec;81(24):8500-6. doi: 10.1128/AEM.02575-15. Epub 2015 Oct 9.
  3. Jordan Yaron, Sandhya Gangaraju, Mounica Rao, Xiangxing Kong, Liqiang Zhang, Fengyu Su, Yanqing Tian, Honor Glenn, Deirdre R. Meldrum. K(+) regulates Ca(2+) to drive inflammasome signaling: dynamic visualization of ion flux in live cells. Cell Death Dis.2015 Oct 29;6:e1954. doi: 10.1038/cddis.2015.277.
  4. Xiangxing Kong, Fengyu Su, Liqiang Zhang, Jordan Yaron, Fred Lee, Xu Shi, Yanqing Tian, Deirdre R. Meldrum. A Highly Selective Mitochondria-Targeting Fluorescent K(+) Sensor. Angew Chem Int Ed Engl. 2015 Oct 5;54(41):12053-7. doi: 10.1002/anie.201506038. Epub 2015 Aug 21. PubMed PMID: 26302172.
  5. Xu Shi, CH Chen, Weimin Gao, Shih-Hui Chao, Deirdre R. Meldrum. Parallel RNA extraction using magnetic beads and a droplet array. Lab Chip. 2015 Feb 21;15(4):1059-65. doi: 10.1039/c4lc01111b. PubMed PMID: 25519439; PubMed Central PMCID: PMC4349128.
2014

2014

  1. Jordan Yaron, Jeiying Pan, Kristen Lee, Clifford Anderson, Honor Glenn. Automated cell counting in a high density, polymer-coated, live single cell sandwich microarray. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 2014 August; 20(S3):1438-1439.
  2. Xianfeng Zhou, Fengyu Su, Yanqing Tian, and Deirdre R. Meldrum. Dually Fluorescent Core-Shell Microgels for Ratiometric Imaging in Live Antigen-Presenting Cells Plos One 9 (2) (2014).
  3. Liqiang Zhang, Fengyu Su, Sean Buizer, Xiangxing Kong, Fred Lee, Kevin Day, Yanqing Tian, and Deirdre R. Meldrum. A polymer-based ratiometric intracellular glucose sensor Chemical Communications 50 (52), 6920-6922 (2014).
  4. Jia Zeng, Aida Mohammadreza, Weimin Gao, Saeed A. Merza, Dean Smith, Laimonas Kelbauskas, and Deirdre R. Meldrum. A Minimally Invasive Method for Retrieving Single Adherent Cells of Different Types from Cultures Scientific Reports 4 (2014).
  5. Jordan R. Yaron, Coleen P. Ziegler, Thai H. Tran, Honor L. Glenn, and Deirdre R. Meldrum. A convenient, optimized pipeline for isolation, fluorescence microscopy and molecular analysis of live single cells Biological Procedures Online 16 (2014).
  6. X Zhou, Fengyu Su, Yanqing Tian, Deirdre R. Meldrum. Dually fluorescent core-shell microgels for ratiometric imaging in live antigen-presenting cells. PLoS One. 2014 Feb 4;9(2):e88185. doi: 10.1371/journal.pone.0088185. eCollection 2014
  7. Bo Wang, Shawn Pugh, David R. Nielsen, Weiwen Zhang, and Deirdre R. Meldrum. Engineering cyanobacteria for photosynthetic production of 3-hydroxybutyrate directly from CO2 (vol 16, pg 68, 2013) Metabolic Engineering 21, 1-1 (2014).
  8. Taraka Sai Pavan Grandhi, Thrimoothy Potta, David J. Taylor, Yanqing Tian, Roger H. Johnson, Deirdre R. Meldrum, and Kashual Rege. Sensitizing cancer cells to TRAIL-induced death by micellar delivery of mitoxantrone Nanomedicine 9 (12), 1775-1788 (2014).
  9. Abishek J. Dharan, Kai-Chun Lin, Patti Senechal-Willis, Laimonas Kelbauskas, Deirdre R. Meldrum, and Michael Goryll. Chemical Cell to Cell Communication on Biomineralized Nanopore Substrates for Single Cell Analysis Biophysical Journal 106 (2), 811A-811A (2014).
2013

2013

  1. Liqiang Zhang, Fengyu Su, Sean Buizer, Hongguang Lu, Weimin Gao, Yanqing Tian, and Deirdre R. Meldrum. A dual sensor for real-time monitoring of glucose and oxygen Biomaterials 34 (38), 9779-9788 (2013).
  2. Jieying Wu, Weimin Gao, Roger H. Johnson, Weiwen Zhang, and Deirdre R. Meldrum. Integrated Metagenomic and Metatranscriptomic Analyses of Microbial Communities in the Meso- and Bathypelagic Realm of North Pacific Ocean Marine Drugs 11 (10), 3777-3801 (2013).
  3. Jiangxin Wang, Xu Shi, Roger H. Johnson, Laimonas Kelbauskas, Weiwen Zhang, and Deirdre R. Meldrum. Single-Cell Analysis Reveals Early Manifestation of Cancerous Phenotype in Pre-Malignant Esophageal Cells Plos One 8 (10) (2013).
  4. Hong Wang, Matthew Stanley, Iniyan Soundappa Elango, Rishabh M. Shetty, Wacey Teller, Andrew Shabilla, Pimwadee Limsirichai, Haixin Zhu, Jeffrey Houkal, Dean Smith, Shih-Hui Chao, Laimonas Kelbauskas, Roger H. Johnson, and Deirdre R. Meldrum. Rotation of cells and cell clusters in culture media for optical computed tomography, presented at the 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013, October 27, 2013 – October 31, 2013, Freiburg, Germany, 2013 (unpublished).
  5. Bo Wang, Shawn Pugh, David R. Nielsen, Weiwen Zhang, and Deirdre R. Meldrum. Engineering cyanobacteria for photosynthetic production of 3-hydroxybutyrate directly from CO2 Metabolic Engineering 16 (1), 68-77 (2013).
  6. Yanqing Tian, Emily Fuller, Summer Klug, Fred Lee, Fengyu Su, Liqiang Zhang, Shih-Hui Chao, and Deirdre R. Meldrum. A fluorescent colorimetric pH sensor and the influences of matrices on sensing performances Sensors and Actuators, B: Chemical 188, 1-10 (2013).
  7. Ganquan Song, Rishabh M. Shetty, Haixin Zhu, Shashanka Ashili, Liqiang Zhang, Grace Kim, Andrew Shabilla, Wacey Teller, Qian Mei, Laimonas Kelbauskas, Yanqing Tian, Hong Wang, Roger H. Johnson, and Deirdre R. Meldrum. Multiple sensor arrays for single cell metabolic analysis, presented at the 12th IEEE SENSORS 2013 Conference, November 4, 2013 – November 6, 2013, Baltimore, MD, United states, 2013 (unpublished).
  8. Xu Shi, Weimin Gao, Shih-hui Chao, Weiwen Zhang, and Deirdre R. Meldrum. Monitoring the single-cell stress response of the diatom Thalassiosira pseudonana by quantitative real-time reverse transcription-PCR Applied and Environmental Microbiology 79 (6), 1850-1858 (2013).
  9. Qian Mei, Roger H. Johnson, Xixi Wei, Fengyu Su, Yan Liu, Laimonas Kelbauskas, Stuart Lindsay, Deirdre R. Meldrum, and Hao Yan. On-chip isotachophoresis separation of functional DNA origami capture nanoarrays from cell lysate Nano Research 6 (10), 712-719 (2013).
  10. Zhang Liqiang, Su Fengyu, Sean Buizer, Lu Hongguang, Gao Weimin, Yanqing Tian, and Deirdre R. Meldrum. A dual sensor for real-time monitoring of glucose and oxygen Biomaterials 34 (38), 9779-9788 (2013).
  11. David B. Agus, Jenolyn F. Alexander, Wadih Arap, Shashanka Ashili, Joseph E. Aslan, Robert H. Austin, Vadim Backman, Kelly J. Bethel, Richard Bonneau, Wei-Chiang Chen, Chira Chen-Tanyolac, Nathan C. Choi, Steven A. Curley, Matthew Dallas, Dhwanil Damania, Paul C. W. Davies, Paolo Decuzzi, Laura Dickinson, Luis Estevez-Salmeron, Veronica Estrella, Mauro Ferrari, Claudia Fischbach, Jasmine Foo, Stephanie I. Fraley, Christian Frantz, Alexander Fuhrmann, Philippe Gascard, Robert A. Gatenby, Yue Geng, Sharon Gerecht, Robert J. Gillies, Biana Godin, William M. Grady, Alex Greenfield, Courtney Hemphill, Barbara L. Hempstead, Abigail Hielscher, W. Daniel Hillis, Eric C. Holland, Arig Ibrahim-Hashim, Tyler Jacks, Roger H. Johnson, Ahyoung Joo, Jonathan E. Katz, Laimonas Kelbauskas, Carl Kesselman, Michael R. King, Konstantinos Konstantopoulos, Casey M. Kraning-Rush, Peter Kuhn, Kevin Kung, Brian Kwee, Johnathon N. Lakins, Guillaume Lambert, David Liao, Jonathan D. Licht, Jan T. Liphardt, Liyu Liu, Mark C. Lloyd, Anna Lyubimova, Parag Mallick, John Marko, Owen J. T. McCarty, Deirdre R. Meldrum, Franziska Michor, Shannon M. Mumenthaler, Vivek Nandakumar, Thomas V. O’Halloran, Steve Oh, Renata Pasqualini, Matthew J. Paszek, Kevin G. Philips, Chistopher S. Poultney, Kuldeepsinh Rana, Cynthia A. Reinhart-King, Robert Ros, Gregg L. Semenza, Patti Senechal, Michael L. Shuler, Srimeenakshi Srinivasan, Jack R. Staunton, Yolanda Stypula, Hariharan Subramanian, Thea D. Tlsty, Garth W. Tormoen, Yiider Tseng, Alexander van Oudenaarden, Scott S. Verbridge, Jenny C. Wan, Valerie M. Weaver, Jonathan Widom, Christine Will, Denis Wirtz, Jonathan Wojtkowiak, Pei-Hsun Wu, and Network Phys Sci Oncology Ctr. A physical sciences network characterization of non-tumorigenic and metastatic cells Scientific Reports 3 (2013).
2012

2012

  1. Haixin Zhu, Xianfeng Zhou, Fengyu Su, Yanqing Tian, Shashanka Ashili, Mark R. Holl, and Deirdre R. Meldrum. Micro-patterning and characterization of PHEMA-co-PAM-based optical chemical sensors for lab-on-a-chip applications Sensors and Actuators, B: Chemical 173, 817-823 (2012).
  2. Haixin Zhu, Yanqing Tian, Shivani Bhushan, Fengyu Su, and Deirdre R. Meldrum. High throughput micropatterning of optical oxygen sensor for single cell analysis Ieee Sensors Journal 12 (6), 1668-1672 (2012).
  3. Xianfeng Zhou, Fengyu Su, Hongguang Lu, Patti Senechal-Willis, Yanqing Tian, Roger H. Johnson, and Deirdre R. Meldrum. An FRET-based ratiometric chemosensor for in vitro cellular fluorescence analyses of pH Biomaterials 33 (1), 171-180 (2012).
  4. Wenjie Zhang, David H. Frakes, Haithem Babiker, Shih-Hui Chao, A. Cody Youngbull, Roger H. Johnson, and Deirdre R. Meldrum. Simulation and experimental characterization of microscopically accessible hydrodynamic microvortices Micromachines 3 (2), 529-541 (2012).
  5. Bo Wang, Jiangxin Wang, Weiwen Zhang, and Deirdre R. Meldrum. Application of synthetic biology in cyanobacteria and algae Frontiers in Microbiology 3 (2012).
2011

2011

  1. Xianfeng Zhou, Fengyu Su, Yanqing Tian, A. Cody Youngbull, Roger H. Johnson, and Deirdre R. Meldrum. A new highly selective fluorescent K+ sensor Journal of the American Chemical Society 133 (46), 18530-18533 (2011).
  2. Xianfeng Zhou, Fengyu Su, Yanqing Tian, Roger H. Johnson, and Deirdre R. Meldrum. Platinum (II) porphyrin-containing thermoresponsive poly(N- isopropylacrylamide) copolymer as fluorescence dual oxygen and temperature sensor Sensors and Actuators, B: Chemical 159 (1), 135-141 (2011).
  3. Xianfeng Zhou, Fengyu Su, Weimin Gao, Yanqing Tian, A. Cody Youngbull, Roger H. Johnson, and Deirdre R. Meldrum. Triazacryptand-based fluorescent sensors for extracellular and intracellular K+ sensing Biomaterials 32 (33), 8574-8583 (2011).
  4. Jia Zeng, Jiangxin Wang, Weimin Gao, Aida Mohammadreza, Laimonas Kelbauskas, Weiwen Zhang, Roger H. Johnson, and Deirdre R. Meldrum. Quantitative single-cell gene expression measurements of multiple genes in response to hypoxia treatment Analytical and Bioanalytical Chemistry 401 (1), 3-13 (2011).
  5. Jieying Wu, Weimin Gao, Weiwen Zhang, and Deirdre R. Meldrum. Optimization of whole-transcriptome amplification from low cell density deep-sea microbial samples for metatranscriptomic analysis Journal of Microbiological Methods 84 (1), 88-93 (2011).
  6. Wandaliz Torres-Garcia, Steven D. Brown, Roger H. Johnson, Weiwen Zhang, George C. Runger, and Deirdre R. Meldrum. Integrative analysis of transcriptomic and proteomic data of Shewanella oneidensis: missing value imputation using temporal datasets Molecular Biosystems 7 (4), 1093-1104 (2011).
  7. Fengyu Su, Ruhaniyah Alam, Qian Mei, Yanqing Tian, and Deirdre R. Meldrum. Micelles as Delivery Vehicles for Oligofluorene for Bioimaging Plos One 6 (9) (2011).
  8. Xu Shi, Liang- I. Lin, Szu-Yu Chen, Weimin Gao, Shih-Hui Chao, Weiwen Zhang, and Deirdre R. Meldrum. Single-cell real-time PCR: Direct process from cells to data, presented at the 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011, October 2, 2011 – October 6, 2011, Seattle, WA, United states, 2011 (unpublished).
  9. Xu Shi, Liang- I. Lin, Szu-Yu Chen, Shih-Hui Chao, Weiwen Zhang, and Deirdre R. Meldrum. Real-time PCR of single bacterial cells on an array of adhering droplets Lab on a Chip 11 (13), 2276-2281 (2011).
  10. Vivek Nandakumar, Laimonas Kelbauskas, Roger H.  Johnson, and Deirdre R. Meldrum. Quantitative Characterization of Preneoplastic Progression Using Single-Cell Computed Tomography and Three-Dimensional Karyometry Cytometry Part A 79A (1), 25-34 (2011).
  11. Qian Mei, Xixi Wei, Fengyu Su, Yan Liu, A. Cody Youngbull, Roger H. Johnson, Stuart Lindsay, Hao Yan, and Deirdre R. Meldrum. Stability of DNA origami nanoarrays in cell lysate Nano Letters 11 (4), 1477-1482 (2011).
  12. Hongguang Lu, Yuguang Jin, Yanqing Tian, Weiwen Zhang, Mark R. Holl, and Deirdre R. Meldrum. New ratiometric optical oxygen and pH dual sensors with three emission colors for measuring photosynthetic activity in cyanobacteria Journal of Materials Chemistry 21 (48), 19293-19301 (2011).
  13. Aurelie Lecluse, Shih-Hui Chao, and Deirdre R. Meldrum. Embedding off-the-shelf filter in PDMS chip for microbe sampling Microfluidics and Nanofluidics 11 (2), 221-225 (2011).
  14. Laimonas Kelbauskas, Shashanka Ashili, Jeffrey Houkal, Dean Smith, Aida Mohammadreza, Kristen B. Lee, Ashok Kumar, Yasser Anis, Tom Paulson, A. Cody Youngbull, Yanqing Tian, Roger H. Johnson, Mark R. Holl, and Deirdre R. Meldrum. A novel method for multiparameter physiological phenotype characterization at the single-cell level, presented at the Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues IX, January 22, 2011 – January 25, 2011, San Francisco, CA, United states, 2011 (unpublished).
  15. Weimin Gao, Weiwen Zhang, and Deirdre R. Meldrum. RT-qPCR based quantitative analysis of gene expression in single bacterial cells Journal of Microbiological Methods 85 (3), 221-227 (2011).
  16. Weimin Gao, Xu Shi, Jieying Wu, Y. G. Jin, Weiwen Zhang, and Deirdre R. Meldrum. Phylogenetic and Gene Expression Analysis of Cyanobacteria and Diatoms in the Twilight Waters of the Temperate Northeast Pacific Ocean Microbial Ecology 62 (4), 765-775 (2011).
  17. Shashanka P. Ashili, Laimonas Kelbauskas, Jeffrey Houkal, Dean Smith, Yanqing Tian, A. Cody Youngbull, Haixin Zhu, Yasser H. Anis, Michael Hupp, Kristen B. Lee, Ashok V. Kumar, Juan Vela, Andrew Shabilla, Roger H. Johnson, Mark R. Holl, and Deirdre R. Meldrum. Automated platform for multiparameter stimulus response studies of metabolic activity at the single-cell level, presented at the Microfluidics, BioMEMS, and Medical Microsystems IX, January 23, 2011 – January 25, 2011, San Francisco, CA, United states, 2011 (unpublished).
  18. Yasser Anis, Jeffrey Houkal, Mark R. Holl, Roger H. Johnson, and Deirdre R. Meldrum. Diaphragm pico-liter pump for single-cell manipulation Biomedical Microdevices 13 (4), 651-659 (2011).
2010

2010

  1. Haixin Zhu, Yanqing Tian, Shivani Bhushan, Fengyu Su, and Deirdre R. Meldrum. High throughput micropatterning of optical oxygen sensor, presented at the 9th IEEE Sensors Conference 2010, SENSORS 2010, November 1, 2010 – November 4, 2010, Waikoloa, HI, United states, 2010 (unpublished).
  2. Yanqing Tian, Wen-Chung Wu, Ching-Yi Chen, Timothy J. Strovas, Yongzhong Li, Yuguang Jin, Fengyu Su, Deirdre R. Meldrum, and Alex K. Y. Jen. 2,1,3-Benzothiadiazole (BTD)-moiety-containing red emitter conjugated amphiphilic poly(ethylene glycol)-block-poly(-caprolactone) copolymers for bioimaging Journal of Materials Chemistry 20 (9), 1728-1736 (2010).
  3. Yanqing Tian, Wen-Chung Wu, Ching-Yi Chen, Sei-Hum Jang, Meng Zhang, Timothy J. Strovas, Judith B. Anderson, Brad T. Cookson, Yongzhong Li, Deirdre R. Meldrum, Wen-Chang Chen, and Alex K. Y. Jen. Utilization of micelles formed from poly(ethylene glycol)-block- poly(-caprolactone) block copolymers as nanocarriers to enable hydrophobic red two-photon absorbing emitters for cells imaging Journal of Biomedical Materials Research – Part A 93 (3), 1068-1079 (2010).
  4. Yanqing Tian, Fengyu Su, Warner Weber, Vivek Nandakumar, Bradley R. Shumway, Yuguang Jin, Xianfeng Zhou, Mark R. Holl, Roger H. Johnson, and Deirdre R. Meldrum. A series of naphthalimide derivatives as intra and extracellular pH sensors Biomaterials 31 (29), 7411-7422 (2010).
  5. Yanqing Tian, Bradley R. Shumway, A. Cody Youngbull, Yongzhong Li, Alex K. Y. Jen, Roger H. Johnson, and Deirdre R. Meldrum. Dually fluorescent sensing of pH and dissolved oxygen using a membrane made from polymerizable sensing monomers Sensors and Actuators B-Chemical 147 (2), 714-722 (2010).
  6. Yanqing Tian, Bradley R. Shumway, and Deirdre R. Meldrum. A new cross-linkable oxygen sensor covalently bonded into poly(2-hydroxyethyl methacrylate)-co-polyacrylamide thin film for dissolved oxygen sensing Chemistry of Materials 22 (6), 2069-2078 (2010).
  7. Yanqing Tian, Bradley R. Shumway, Weimin Gao, A. Cody Youngbull, Mark R. Holl, Roger H. Johnson, and Deirdre R. Meldrum. Influence of matrices on oxygen sensing of three sensing films with chemically conjugated platinum porphyrin probes and preliminary application for monitoring of oxygen consumption of Escherichia coli (E. coli) Sensors and Actuators, B: Chemical 150 (2), 579-587 (2010).
  8. Yanqing Tian, Bradley R. Shumway, A. Cody Youngbull, Yongzhong Li, Alex K. Y. Jen, Roger H. Johnson, and Deirdre R. Meldrum. Dually fluorescent sensing of pH and dissolved oxygen using a membrane made from polymerizable sensing monomers Sensors and Actuators, B: Chemical 147 (2), 714-722 (2010).
  9. Tathagata Ray, Haixin Zhu, and Deirdre R. Meldrum. Deep reactive ion etching of fused silica using a single-coated soft mask layer for bio-analytical applications Journal of Micromechanics and Microengineering 20 (9) (2010).
  10. Vincent Pizziconi, Susan Haag, Tirupalavanam Ganesh, Lynn Cozort, Stephen Krause, Amaneh Tasooji, B. L. Ramakrishna, Deirdre R.  Meldrum, Brian Lunt, Albert Valdez, and Victoria Yarbrough. The P3E2 project: The introduction, implementation and evaluation of engineering design integrated across the middle school curriculum, presented at the 2010 ASEE Annual Conference and Exposition, June 20, 2010 – June 23, 2010, Louisville, KY, United states, 2010 (unpublished).
  11. Saeed A. Merza, Jonathan D. Posner, Yasser H. Anis, A. Cody Young, Roger H. Johnson, and Deirdre R. Meldrum. Microfluidic device for transport and observation of single cells, presented at the ASME 2009 International Mechanical Engineering Congress and Exposition, IMECE2009, November 13, 2009 – November 19, 2009, Lake Buena Vista, FL, United states, 2010 (unpublished).
  12. Yongzhong Li, Hansa Thompson, Courtney Hemphill, Fan Hong, Jessica Forrester, Roger H. Johnson, Weiwen Zhang, and Deirdre R. Meldrum. An improved one-tube RT-PCR protocol for analyzing single-cell gene expression in individual mammalian cells Analytical and Bioanalytical Chemistry 397 (5), 1853-1859 (2010).
  13. Yuguang Jin, Yanqing Tian, Weiwen Zhang, Sei-Hum Jang, Alex K. Y. Jen, and Deirdre R. Meldrum. Tracking bacterial infection of macrophages using a novel red-emission pH sensor, presented at the Tandem MS for Environmental and Food Analysis (pp. 1143-1247), Tiergartenstrasse 17, Heidelberg, D-69121, Germany, 2010 (unpublished).
  14. Yuguang Jin, Yanqing Tian, Weiwen Zhang, Sei-Hum Jang, Alex K. Y. Jen, and Deirdre R. Meldrum. Tracking bacterial infection of macrophages using a novel red-emission pH sensor, 1-10 (2010).
  15. James R. Etzkorn, Wen-Chung Wu, Zhiyuan Tian, Prince Kim, Sei-Hum Jang, Deirdre R. Meldrum, Alex K. Y. Jen, and Babak A. Parviz. Using micro-patterned sensors and cell self-assembly for measuring the oxygen consumption rate of single cells Journal of Micromechanics and Microengineering 20 (9) (2010).
  16. Yasser H. Anis, Mark R. Holl, and Deirdre R. Meldrum. Automated selection and placement of single cells using vision-based feedback control Ieee Transactions on Automation Science and Engineering 7 (3), 598-606 (2010).
2009

2009

2009

  1. Haixin Zhu, Mark R. Holl, Tathagata Ray, Shivani Bhushan, and Deirdre R. Meldrum. Characterization of deep wet etching of fused silica glass for single cell and optical sensor deposition Journal of Micromechanics and Microengineering 19 (6) (2009).
  2. Wandaliz Torres-Garcia, Weiwen Zhang, George C. Runger, Roger H. Johnson, and Deirdre R. Meldrum. Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins Bioinformatics 25 (15), 1905-1914 (2009).
  3.  Timothy W. Molter, Sarah C. McQuaide, Martin T. Suchorolski, Timothy J. Strovas, Lloyd W. Burgess, Deirdre R. Meldrum, and Mary E. Lidstrom. A microwell array device capable of measuring single-cell oxygen consumption rates Sensors and Actuators, B: Chemical 135 (2), 678-686 (2009).
  4. Deirdre R. Meldrum, Mingjun Zhang, Luwei Lin, Channing R. Robertson, T. C. Yih, and Chiming Wei. Guest editorial special section on drug delivery automation Ieee Transactions on Automation Science and Engineering 6 (2), 205-208 (2009).
  5. Deirdre R. Meldrum, Mingjun Zhang, Liwei Lin, Channing R. Robertson, T. C. Yih, and Chiming Wei. Special Section on Drug Delivery Automation Ieee Transactions on Automation Science and Engineering 6 (2), 205-208 (2009).
  6. Liang- I. Lin, Shih-Hui Chao, and Deirdre R. Meldrum. Microscale Oil-Covered Cell Array (MOCCA): A droplet array for high-content single-cell analysis and imaging, presented at the 7th International Conference on Nanochannels, Microchannels, and Minichannels, ICNMM2009, June 22, 2009 – June 24, 2009, Pohang, Korea, Republic of, 2009 (unpublished).
  7. Liang- I. Lin, Shih-Hui Chao, and Deirdre R. Meldrum. Practical, Microfabrication-Free Device for Single-Cell Isolation Plos One 4 (8) (2009).
  8. John H.  Koschwanez, Robert H. Carlson, and Deirdre R. Meldrum. Thin PDMS Films Using Long Spin Times or Tert-Butyl Alcohol as a Solvent Plos One 4 (2) (2009).
  9. James R. Etzkorn, Sarah C. McQuaide, Judy B. Anderson, Deirdre R. Meldrum, and Babak A. Parviz. Forming self-assembled cell arrays and measuring the oxygen consumption rate of a single live cell, presented at the TRANSDUCERS 2009 – 15th International Conference on Solid-State Sensors, Actuators and Microsystems, June 21, 2009 – June 25, 2009, Denver, CO, United states, 2009 (unpublished).
  10. Shih-Hui Chao and Deirdre R. Meldrum. Liquid pumping with surface tension-confined microfluidics, presented at the 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2009, November 1, 2009 – November 5, 2009, Jeju, Korea, Republic of, 2009 (unpublished).
  11. Shih-Hui Chao and Deirdre R.  Meldrum. Spontaneous, oscillatory liquid transport in surface tension-confined microfluidics Lab on a Chip 9 (7), 867-869 (2009).
2008

2008

  1. Clement S. Sun, James R. Etzkorn, Mark R. Holl, Timothy W. Molter, Shawn K. McGuire, Sarah C. McQuaide, Lloyd W. Burgess, Mary E. Lidstrom, and Deirdre R. Meldrum. Integration of user interface, device control, data acquisition and analysis for automated multi-spectral imaging of single biological cells, presented at the 4th IEEE Conference on Automation Science and Engineering, CASE 2008, August 23, 2008 – August 26, 2008, Washington, DC, United states, 2008 (unpublished).
  2. Pahnit Seriburi, Shawn K. McGuire, Ashutosh Shastry, Karl F. Bohringer, and Deirdre R. Meldrum. Measurement of the cell-substrate separation and the projected area of an individual adherent cell using electric cell-substrate impedance sensing Analytical Chemistry 80 (10), 3677-3683 (2008).
  3. Timothy W. Molter, Mark R. Holl, Joseph M. Dragavon, Sarah C. McQuaide, Judith B. Anderson, A. Cody Young, Lloyd W. Burgess, Mary E. Lidstrom, and Deirdre R. Meldrum. A new approach for measuring single-cell oxygen consumption rates Ieee Transactions on Automation Science and Engineering 5 (1), 32-40 (2008).
  4. Deirdre R. Meldrum and Oussama Khatib. Welcome message from the conference general chairs Proceedings of the 2nd Biennial IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, BioRob 2008 (2008).
  5. Shawn K.  McGuire, Charles H.  Fisher, Mark R. Holl, and Deirdre R. Meldrum. A novel pressure-driven piezodispenser for nanoliter volumes Review of Scientific Instruments 79 (8) (2008).
  6. Barry R. Lutz, Daniel T. Schwartz, Jian Chen, and Deirdre R. Meldrum. Non-contact single-cell traps created by gentle fluid forces, presented at the 2008 AIChE Annual Meeting, AIChE 100, November 16, 2008 – November 21, 2008, Philadelphia, PA, United states, 2008 (unpublished).
  7. Szu-Yuan Lee, Jhen-Gang Huang, Tsung-Liang Chuang, Jin-Chuan Sheu, Yi-Kuang Chuang, Mark R. Holl, Deirdre R. Meldrum, Chun-Nan Lee, and Chii-Wann Lin. Compact optical diagnostic device for isothermal nucleic acids amplification Sensors and Actuators, B: Chemical 133 (2), 493-501 (2008).
  8. Joseph M. Dragavon, Timothy W. Molter, A. Cody Youngbull, Timothy J. Strovas, Sarah C. McQuaide, Mark R. Holl, Zhang Meng, Brad T. Cookson, Alex K. Y. Jen, Mary E.  Lidstrom, Deirdre R. Meldrum, and Lloyd W. Burgess. A cellular isolation system for real-time single-cell oxygen consumption monitoring Journal of the Royal Society Interface 5 (suppl2), 151-159 (2008).
  9. Yasser H. Anis, Mark R. Holl, and Deirdre R. Meldrum. Automated vision-based selection and placement of single cells in microwell array formats, presented at the 4th IEEE Conference on Automation Science and Engineering, CASE 2008, August 23, 2008 – August 26, 2008, Washington, DC, United states, 2008 (unpublished).
2007

2007

  1. A. Cody Youngbull, Joseph M.  Dragavon, Timothy J. Strovas, Timothy W. Molter, Lixin Zheng, Lloyd W. Burgess, Alex K. Y. Jen, Mary E. Lidstrom, and Deirdre R. Meldrum. Two-photon lithography of platinum-porphyrin oxygen sensors Ieee Sensors Journal 7 (6), 931-936 (2007).
  2. Pahnit Seriburi, Ashutosh Shastry, Timothy T. H. Ren, Steven A. Gales, Karl F. Bohringer, and Deirdre R. Meldrum. Using electric cell-substrate impedance sensing to measure changes in the projected area of individual cells, presented at the TRANSDUCERS ’07 & Eurosensors XXI. 2007 14th International Conference on Solid-State Sensors, Actuators and Microsystems, 10-14 June 2007, Piscataway, NJ, USA, 2007 (unpublished).
  3. Ehsan Saeedi, Samuel S. Kim, James R. Etzkorn, Deirdre R. Meldrum, and Babak A. Parviz. Automation and yield of micron-scale self-assembly processes, presented at the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007, September 22, 2007 – September 25, 2007, Scottsdale, AZ, United states, 2007 (unpublished).
  4. Timothy W. Molter, Sarah C. McQuaide, Meng Zhang, Mark R. Holl, Lloyd W. Burgess, Mary E. Lidstrom, and Deirdre R. Meldrum. Algorithm advancements for the measurement of single cell oxygen consumption rates, presented at the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007, September 22, 2007 – September 25, 2007, Scottsdale, AZ, United states, 2007 (unpublished).
  5. Deirdre R. Meldrum and Mike Tao Zhang. Welcome Message from the Conference General and Program Chairs Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007, nil99-nil99 (2007).
  6. Patrick J. McVittie, Clement S. Sun, Tim W. Molter, Sarah C. McQuaide, Mary E. Lidstrom, Mark R. Holl, and Deirdre R. Meldrum. Automated classification of macrophage membrane integrity using a fluorescent live/dead stain, presented at the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007, September 22, 2007 – September 25, 2007, Scottsdale, AZ, United states, 2007 (unpublished).
  7. Szu-Yuan Lee, Chun-Nan Lee, Holl Mark, Deirdre R. Meldrum, and Chii-Wann Lin. Efficient, specific, compact hepatitis B diagnostic device: Optical detection of the hepatitis B virus by isothermal amplification Sensors and Actuators, B: Chemical 127 (2), 598-605 (2007).
  8. Szu-Yuan Lee, Chun-Nan Lee, Mark R. Holl, Deirdre R. Meldrum, Chih-Kung Lee, and Chii-Wann Lin. Optimal hepatitis B virus primer sequence design for isothermal amplification Biomedical Engineering – Applications, Basis and Communications 19 (3), 137-144 (2007).
  9. John H. Koschwanez, Robert H. Carlson, and Deirdre R. Meldrum. Easily fabricated magnetic traps for single-cell applications Review of Scientific Instruments 78 (4) (2007).
  10. Samuel S. Kim, Ehsan Saeedi, Deirdre R. Meldrum, and Babak A. Parviz. Self-assembled heterogeneous integrated fluorescence detection system, presented at the 2007 2nd IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2007, January 16, 2007 – January 19, 2007, Bangkok, Thailand, 2007 (unpublished).
  11. Ling-Sheng Jang, Shih-Hui Chao, Mark R. Holl, and Deirdre R. Meldrum. Resonant mode-hopping micromixing Sensors and Actuators, A: Physical 138 (1), 179-186 (2007).
  12. Andrew W. Holle, Shih-Hui Chao, Mark R. Holl, Jeffrey M. Houkal, and Deirdre R. Meldrum. Characterization of program controlled CO2 laser-cut PDMS channels for lab-on-a-chip applications, presented at the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007, September 22, 2007 – September 25, 2007, Scottsdale, AZ, United states, 2007 (unpublished).
  13. Paolo Dario, Deirdre R. Meldrum, and Oussama Khatib. Editorial: Special issue on the first IEEE/RAS-EMBS international conference on biomedical robotics and biomechatronics (BioRob 2006) International Journal of Robotics Research 26 (11-12), 1157-1158 (2007).
  14. Jaeyoung Choi, Prasad Saripalli, Deirdre R. Meldrum, and Ju Young Lee. Development of cellular absorptive tracers (CATs) for a quantitative characterization of microbial mass in flow systems Bioresource Technology 98 (18), 3630-3633 (2007).
  15. Shih-Hui Chao, Tim J. Strovas, Shile Zhang, Kendan A. Jones-Isaac, and Deirdre R. Meldrum. Single-cell information extraction and viability analysis using automated microscopy, presented at the 2006 IEEE International Conference on Automation Science and Engineering, CASE, October 8, 2006 – October 10, 2006, Shanghai, China, 2007 (unpublished).
  16. Shih-Hui Chao, Mark R. Holl, Sarah C. McQuaide, Timothy T. H. Ren, Steven A. Gales, and Deirdre R. Meldrum. Phosphorescence lifetime based oxygen microsensing using a digital micromirror device Optics Express 15 (17), 10681-10689 (2007).
  17. Shih-Hui Chao, Robert H. Carlson, and Deirdre R. Meldrum. Fabrication of lenses with high light-collecting ability using water molds, presented at the 5th International Conference on Nanochannels, Microchannels and Minichannels, ICNMM2007, June 18, 2007 – June 20, 2007, Puebla, Mexico, 2007 (unpublished).
  18. Shih Hui Chao, Mark R. Holl, Sarah C. McQuaide, Timothy T. H. Ren, Steven A. Gales, and Deirdre R. Meldrum. Phosphorescence lifetime based oxygen microsensing using a digital micromirror device Optics Express 15 (17), 10681-10689 (2007).
  19. Shih Hui Chao, Robert H. Carlson, and Deirdre R. Meldrum. Rapid fabrication of microchannels using microscale plasma activated templating (mu PLAT) generated water molds Lab on a Chip 7 (5), 641-643 (2007).
2006

2006

  1. Mingjun Zhang, Robin A. Felder, Eun Sok Kim, Bradley Nelson, Beth L. Pruitt, Yuan F. Zheng, and Deirdre R. Meldrum. Special issue on life science automation Ieee Transactions on Automation Science and Engineering 3 (2), 137-138 (2006).
  2. Shen Pan, Gidon Shavit, Marta Penas-Centeno, Dong-Hui Xu, Linda Shapiro, Richard Ladner, Eve Riskin, Wim Hol, and Deirdre R. Meldrum. Automated classification of protein crystallization images using support vector machines with scale-invariant texture and Gabor features Acta Crystallographica, Section D (Biological Crystallography) D62 (3), 271-279 (2006).
  3. Barry R. Lutz, Jian Chen, Daniel T. Schwartz, and Deirdre R. Meldrum. Trapping chemical dosing of suspended cells in hydrodynamic tweezer arrays, presented at the 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2006, November 5, 2006 – November 9, 2006, Tokyo, Japan, 2006 (unpublished).
  4. John H. Koschwanez, Jim Wolfe, Mark R. Holl, Robert H. Carlson, and Deirdre R. Meldrum. Automated, biomechatronic system to study single cell aging, presented at the 1st IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, 2006, BioRob 2006, February 20, 2006 – February 22, 2006, Pisa, Italy, 2006 (unpublished).
  5. John H. Koschwanez, Robert H. Carlson, and Deirdre R.  Meldrum. Single cell capture with ferromagnetic elements grown on PDMS, presented at the 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2006, November 5, 2006 – November 9, 2006, Tokyo, Japan, 2006 (unpublished).
  6. Ling-Sheng Jang, Hao-Kai Keng, Yi-Chu Hsu, and Deirdre R. Meldrum. Development of protein chips based on self-assembled monolayer and protein A, presented at the ISCAS 2006: 2006 IEEE International Symposium on Circuits and Systems, May 21, 2006 – May 24, 2006, Kos, Greece, 2006 (unpublished).
  7. Tracy Helen Fung, Shih-Hui Chao, Joseph E. Peach, and Deirdre R. Meldrum. Liquid crystal thermography of an on-chip polymerase chain reaction micro-thermocycler, presented at the 4th International Conference on Nanochannels, Microchannels and Minichannels, ICNMM2006, June 19, 2006 – June 21, 2006, Limerick, Ireland, 2006 (unpublished).
  8. Paolo Dario and Deirdre R. Meldrum. Proceedings of: The First IEEE / RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics. BioRob 2006: Foreword Proceedings of the First IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, 2006, BioRob 2006 2006, iii-iii (2006).
  9. Jaeyoung Choi, Deirdre R. Meldrum, K. Prasad Saripalli, and Ju Young Lee. Development of cellular absorptive tracers (CATs) for a quantitative characterization of the complexity of nanoscale biological systems Abstracts of Papers of the American Chemical Society 232, 504-504 (2006).
  10. Shih-Hui Chao, Timothy J. Strovas, Ting-She M. Wang, Kendan A. Jones-Isaac, Susan L. Fink, Brad T. Cookson, and Deirdre R. Meldrum. High-throughput, long-term imaging of Salmonella infecting macrophages in a micro-environmental system, presented at the 4th International Conference on Nanochannels, Microchannels and Minichannels, ICNMM2006, June 19, 2006 – June 21, 2006, Limerick, Ireland, 2006 (unpublished).
  11. Shih-Hui Chao, Timothy T. H. Ren, Steven A. Gales, Mark R. Holl, Sarah C. McQuaide, and Deirdre R. Meldrum. Automated digital light modulation microscope (DLMM) for living cell array analysis: Pattern recognition and spatial alignment, presented at the 1st IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, 2006, BioRob 2006, February 20, 2006 – February 22, 2006, Pisa, Italy, 2006 (unpublished).
  12. Shih-Hui Chao, Mark R. Holl, Sarah C. McQuaide, and Deirdre R. Meldrum. Oxygen concentration measurement with a phosphorescence lifetime based micro-sensor array using a digital light modulation microscope, presented at the Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues IV, January 23, 2006 – January 25, 2006, San Jose, CA, United states, 2006 (unpublished).
  13. Shih-Hui Chao, Robert H. Carlson, and Deirdre R. Meldrum. Soft lithography without using photolithography, presented at the 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2006, November 5, 2006 – November 9, 2006, Tokyo, Japan, 2006 (unpublished).
2005

2005

  1. Pahnit Seriburi, Ashutosh Shastry, Angelique Van’t Wout, John Mittler, Shih-Hui Chao, John H. Koschwanez, and Deirdre R. Meldrum. Lower limits of detection for single biological particles using impedance spectroscopy, presented at the 4th ASME Integrated Nanosystems Conference: Design, Synthesis, and Applications, September 14, 2005 – September 16, 2005, Berkeley, CA, United states, 2005 (unpublished).
  2. Andrew K. Miller, Matthew L. Stanton, Carissa A. Sanchez, Xiaohong Li, Sarah C. McQuaide, Brian J. Reid, Deirdre R. Meldrum, Thomas G. Paulson, and Mark R. Holl. Biopsy preparation for flow analysis using microfabricated disaggregation blades, presented at the 2005 IEEE Conference on Automation Science and Engineering, IEEE-CASE 2005, August 1, 2005 – August 2, 2005, Edmonton, Canada, 2005 (unpublished).
  3. Deirdre R. Meldrum, Mark R. Holl, Charles H. Fisher, Mohan S. Saini, Shawn K. McGuire, Timothy T. H. Ren, William H. Pence, Stephen E. Moody, David L. Cunningham, Douglas A. Donaldson, and Peter J. Wiktor. Sample preparation in glass capillaries for high-throughput biochemical analyses, presented at the 2005 IEEE Conference on Automation Science and Engineering, IEEE-CASE 2005, August 1, 2005 – August 2, 2005, Edmonton, Canada, 2005 (unpublished).
  4. Barry R. Lutz and Deirdre R. Meldrum. Hydrodynamic tweezers: Single -cell trapping arrays for cell dynamics, presented at the 9th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2005, October 9, 2005 – October 13, 2005, Boston, MA, United states, 2005 (unpublished).
  5. John H. Koschwanez, Mark R. Holl, Robert H. Carlson, Michael McMurray, Daniel Gottschling, and Deirdre R. Meldrum. Automated lifetime analysis of a single yeast cell, presented at the 2005 IEEE International Conference on Automation Science and Engineering (CASE), 1-2 Aug. 2005, Piscataway, NJ, USA, 2005 (unpublished).
  6. Ling-Sheng Jang, Shih-Hui Chao, Mark R. Holl, and Deirdre R. Meldrum. Microfluidic circulatory flows induced by resonant vibration of diaphragms Sensors and Actuators, A: Physical 122 (1 SPEC. ISS.), 141-148 (2005).
  7. Shih-Hui Chao, Mark R. Holl, John H. Koschwanez, Pahnit Seriburi, and Deirdre R. Meldrum. Scaling for microfluidic mixing, presented at the 3rd International Conference on Microchannels and Minichannels, ICMM2005, June 13, 2005 – June 15, 2005, Toronto, ON, Canada, 2005 (unpublished).
  8. Shih-Hui Chao, Mark R. Holl, John H. Koschwanez, Robert H. Carlson, Ling-Sheng Jang, and Deirdre R. Meldrum. Velocity measurement in microchannels with a laser confocal microscope and particle linear image velocimetry Microfluidics and Nanofluidics 1 (2), 155-160 (2005).
  9. Robert H. Carlson and Deirdre R. Meldrum. Electrostatic actuators composed of extensible graphite-PDMS composite membranes, presented at the 9th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2005, October 9, 2005 – October 13, 2005, Boston, MA, United states, 2005 (unpublished).
  10. Robert H. Carlson, John H. Koschwanez, and Deirdre R. Meldrum. Novel material patterning for electronic and magnetic components on PDMS, presented at the 9th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2005, October 9, 2005 – October 13, 2005, Boston, MA, United states, 2005 (unpublished).
  11. Diego Barrettino, Barry R. Lutz, Maria E. Martin, Sarah C. McQuaide, and Deirdre R. Meldrum. CMOS readout and control architecture for single-cell real-time microsystems, presented at the IEEE International Symposium on Circuits and Systems (ISCAS), 23-26 May 2005, Piscataway, NJ, USA, 2005 (unpublished).
2004

2004

  1. Deirdre R. Meldrum. A thirst for challenges Biotechniques 36 (2), 193-193 (2004).
  2. John H. Koschwanez, Mark R. Holl, Michael McMurray, Daniel Gottschling, and Deirdre R. Meldrum. Automation of yeast pedigree analysis, presented at the Proceedings- 2004 IEEE International Conference on Robotics and Automation, April 26, 2004 – May 1, 2004, New Orleans, LA, United states, 2004 (unpublished).
  3. John H. Koschwanez, Mark R. Holl, Brian Marquardt, Joseph M.  Dragavon, Lloyd W. Burgess, and Deirdre R. Meldrum. Identification of budding yeast using a fiber-optic imaging bundle Review of Scientific Instruments 75 (5 PART 1), 1363-1365 (2004).
  4. Tracy H. Fung, Gregory I. Ball, Sarah C. McQuaide, Shih-Hui Chao, Alejandro Colman-Lerner, Mark R. Holl, and Deirdre R. Meldrum. Microprinting of on-chip cultures: Patterning of yeast cell microarrays using concanavalin-a adhesion, presented at the 2004 ASME International Mechanical Engineering Congress and Exposition, IMECE, November 13, 2004 – November 19, 2004, Anaheim, CA, United states, 2004 (unpublished).
2003

2003

  1. Deirdre R. Meldrum, Mark R. Holl, Pahnit Seriburi, S. Phillips, Shih-Hui Chao, Ling-Sheng Jang, and F. Kosar. MEMS modules for life-on-a-chip, presented at the Proceedings of the 2003 IEEE International Symposium on Circuits and Systems, May 25, 2003 – May 28, 2003, Bangkok, Thailand, 2003 (unpublished).
  2. Deirdre R. Meldrum, Charles H. Fisher, Matthew P. Moore, Mohan Saini, Mark R. Holl, William H. Pence, Stephen E. Moody, David L. Cunningham, and Peter J. Wiktor. ACAPELLA-5K, A High-Throughput Automated Genome and Chemical Analysis System, presented at the 2003 IEEE/RSJ International Conference on Intelligent Robots and Systems, October 27, 2003 – October 31, 2003, Las Vegas, NV, United states, 2003 (unpublished).
  3. Mary E. Lidstrom and Deirdre R. Meldrum. Life-on-a-chip Nature Reviews Microbiology 1 (2), 158-164 (2003).
2002

2002

  1. Deirdre R. Meldrum and Mark R. Holl. Microscale bioanalytical systems Science 297 (5584), 1197-1198 (2002).
  2. Deirdre R. Meldrum. Cytometry microsystems in the human genome project Cytometry, 25-25 (2002).
2001

2001

  1. Deirdre R. Meldrum, William H. Pence, Stephen E. Moody, David L. Cunningham, Mark R. Holl, and Peter J. Wiktor. Automated microfluidics for genomics, presented at the 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Oct 25 – 28 2001, Istanbul, Turkey, 2001 (unpublished).
  2. B. G. Hansen, P. T. Martin, H. Joseph Perrin, and Deirdre R. Meldrum. Delivering road weather information to the traveling public Transportation Research Record (1745), 46-52 (2001).
2000

Before 2000

  1. D. S. Bayard, F. Y. Hadaegh, and D. R. Meldrum, ―Optimal experiment design for identification of large space structures,‖ Automatica: Journal of International Federation of Automatic Control, vol. 24, no. 3, pp. 357-364, May 1988. (doi:10.1016/0005-1098(88)90076-3),  http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6V21-47WVH6C-G-1&_cdi=5689&_user=56861&_pii=0005109888900763&_origin=gateway&_coverDate=05%2F31%2F1988&_sk=999759996&view=c&wchp=dGLzVzb- zSkzS&md5=ca4f193df0655b4aa1226248cfd346e3&ie=/sdarticle.pdf
  2.  J. T. Wen and D. R. Meldrum, ―Discrete-time model reference adaptive control using CGT concept,‖ NASA Tech Briefs Journal, vol. 13, no. 3, p. 48, March 1989.
  3. D. R. Meldrum, ―Engineering in genomics: The interdisciplinary nature of genomics,‖ IEEE Engineering in Medicine and Biology, vol. 14, no. 4, pp. 443-448, July/August 1995 [invited].
  4. E. Tongco and D. R. Meldrum, ―Optimal sensor placement and active vibration suppression of large flexible space structures,‖ AIAA Journal of Guidance, Control, and Dynamics, pp. 961-963, July- August 1996.
  5. Deirdre Meldrum, ―A biomechatronic fluid sample handling system for DNA processing,‖ IEEE/ASME Transactions on Mechatronics, special issue on Mechatronics in Manufacturing, vol. 2, no. 2, pp. 99-109, June 1997 [invited].  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=588628
  6. Lauren Sjoboen and Deirdre Meldrum, ―Compact jam resistant capillary dispenser for automation systems,‖ Laboratory Robotics and Automation, vol. 10, pp. 15-17, 1998.  http://onlinelibrary.wiley.com/doi/10.1002/%28SICI%291098-2728%281998%2910:1%3C15::AID- LRA3%3E3.0.CO;2-0/pdf
  7. H. T. Evensen, D. R. Meldrum, and D. L. Cunningham, ―Automated fluid mixing in glass capillaries,‖ AIP Review of Scientific Instruments, vol. 69, no. 2, pp. 519-526, Feb. 1998. (doi:10.1063/1.1148690),  http://rsi.aip.org/resource/1/rsinak/v69/i2/p519_s1
  8. Neal Friedman and Deirdre Meldrum, ―Capillary tube resistive thermal cycling,‖ Analytical Chemistry, vol. 70, no. 14, pp. 2997-3002, July 15, 1998. (doi10.1021/ac971303n),  http://pubs.acs.org/doi/pdf/10.1021/ac971303n
  9. C. Taylor and D. R. Meldrum, ―Fuzzy ramp metering: design overview and simulation results,‖ Transportation Research Record, no. 1634, pp. 10-18, November 1998.  http://dx.doi.org/10.3141/1634-02   https://trb.metapress.com/content/cx117528276h3685/resource-  secured/?target=fulltext.pdf
  10. E. B. Arutunian, D. R. Meldrum, N. A. Friedman, and S. E. Moody, ―Flexible software architecture for user-interface and machine control in laboratory automation,‖ BioTechniques, vol. 25, no. 4, pp. 698- 700, 702, 704-705, October 1998.  http://www.biotechniques.com/multimedia/archive/00006/98254bi01_6469a.pdf
  11. Marco Daoura and Deirdre Meldrum, ―Precise automated control of fluid volumes inside glass capillaries,‖ IEEE Journal of Microelectromechanical Systems, vol. 8, no. 1, pp. 71-77, March 1999.  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=749405
  12. H. T. Evensen, D. R. Meldrum, C. Saenphimmachak, and E. E. Dixon, ―High-density small-volume gel loading directly from capillary tubes,‖ BioTechniques, vol. 27, no. 5, pp. 974-978, 1999.  http://www.biotechniques.com/multimedia/archive/00010/99275st05_10032a.pdf
  13. D. R. Meldrum, H.T. Evensen, W. H. Pence, S. E. Moody, D. L. Cunningham, and P. J. Wiktor,―ACAPELLA-1K, a capillary-based submicroliter automated fluid handling system for genome analysis,‖ Genome Research, vol. 10, no. 1, pp. 95-104, January 2000.  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC310502/pdf/x16.pdf
  14. D. R. Meldrum, H.T. Evensen, W.H. Pence, S.E. Moody , D.L. Cunningham, and P.J. Wiktor,―ACAPELLA-1K, a biomechatronic fluid handling system for genome analysis that processes 1000 samples in 8 hours,‖ IEEE/ASME Transactions on Mechatronics, vol. 5, no. 2, pp. 212-220, June 2000 [invited]. (doi:10.1109/3516.847094),  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=847094
  15. Deirdre Meldrum, ―Automation for genomics: Part 1, preparation for sequencing,‖ Genome Research, vol. 10, no. 8, pp. 1081-1092, August 2000 [invited]. (doi:10.1101/gr.101400), http://genome.cshlp.org/content/10/8/1081.full.pdf+html
  16. Deirdre Meldrum, ―Automation for genomics: Part 2, sequencers, microarrays, and future trends,‖ Genome Research, vol. 10, no. 9, pp. 1288-1303, September 2000 [invited]. (doi:10.1101/gr.157400), http://genome.cshlp.org/content/10/9/1288.full.pdf+html

Joseph Chao

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Select publications

1.     Shi X, Gao W, Wang J, Chao SH, Zhang W, et al. Measuring gene expression in single bacterial cells: recent advances in methods and micro-devices. Critical reviews in biotechnology. 2015; 35(4):448-60. PubMed [journal] PMID: 24708071

2.     Shi X, Chen CH, Gao W, Chao SH, Meldrum DR. Parallel RNA extraction using magnetic beads and a droplet array. Lab on a chip. 2015; 15(4):1059-65. PubMed [journal] PMID: 25519439, PMCID: PMC4349128

2014

2014

Hashimoto-Torii K, Torii M, Fujimoto M, Nakai A, El Fatimy R, et al. Roles of heat shock factor 1 in neuronal response to fetal environmental risks and its relevance to brain disorders. Neuron. 2014; 82(3):560-72. NIHMSID: NIHMS573722 PubMed [journal] PMID: 24726381, PMCID: PMC4051437

2013

2013

  1. Tian Y, Fuller E, Klug S, Lee F, Su F, et al. A fluorescent colorimetric pH sensor and the influences of matrices on sensing performances. Sensors and actuators. B, Chemical. 2013; 188:1-10. NIHMSID: NIHMS504217 PubMed [journal] PMID: 24078772, PMCID: PMC3782379

  2. Shi X, Gao W, Chao SH, Zhang W, Meldrum DR. Monitoring the single-cell stress response of the diatom Thalassiosira pseudonana by quantitative real-time reverse transcription-PCR. Applied and environmental microbiology. 2013; 79(6):1850-8. PubMed [journal] PMID: 23315741, PMCID: PMC3592218

  3. Gao W, Navarroli D, Naimark J, Zhang W, Chao SH, et al. Microbe observation and cultivation array (MOCA) for cultivating and analyzing environmental microbiota. Microbiome. 2013; 1(1):4. PubMed [journal] PMID: 24468000, PMCID: PMC3869193

2011

2011

Shi X, Lin LI, Chen SY, Chao SH, Zhang W, et al. Real-time PCR of single bacterial cells on an array of adhering droplets. Lab on a chip. 2011; 11(13):2276-81. PubMed [journal] PMID: 21607246

2009

2009

  1. Liang-I Lin, Shih-hui Chao, Deirdre Meldrum. Practical, Microfabrication-Free Device for Single-Cell Isolation. PLoS ONE (2009).

  2. Shih-hui Chao, Deirdre Meldrum. Spontaneous, oscillatory liquid transport in surface tension-confined microfluidics. Lab on a Chip (2009).

  3. Book chapter: Robert Carlson, Shih-hui Chao, and John Koschwanez. Fabrication of Lab-on-a-Chip Devices using Microscale PLasma-Activated Templating (µPLAT). Lab On A Chip Technology. Caister Academic Press (2009).

  4. Shih-hui Chao, Deirdre R. Meldrum. Liquid pumping with surface tension-confined microfluidics. Proceedings of the 13th international conference on Miniaturized Systems for Chemistry and Life Sciences (2009).

2008

2008

X Shi, J Wu, W Gao, S Chao, W Zhang, D R Meldrum. Towards a Genome-Enabled Sensor for In Situ Monitoring of Microbial Communities in Hydrothermal Vent Fields. Eos Trans. American Geophysical Union Fall Meeting (2008).

2007

2007

  1. Chao SH, Holl MR, McQuaide SC, Ren TT, Gales SA, et al. Phosphorescence lifetime based oxygen micro-sensing using a digital micromirror device. Optics express. 2007; 15(17):10681-9. PubMed [journal] PMID: 19547422

  2. Jang LS, Chao SH, Holl MR, Meldrum DR. Resonant Mode-hopping Micromixing. Sensors and actuators. A, Physical. 2007; 138(1):179-186. NIHMSID: NIHMS27415 PubMed [journal] PMID: 19551159, PMCID: PMC2699686

  3. Chao SH, Carlson R, Meldrum DR. Rapid fabrication of microchannels using microscale plasma activated templating (microPLAT) generated water molds. Lab on a chip. 2007; 7(5):641-3. PubMed [journal] PMID: 17476386